Here is a list of all class members with links to the classes they belong to:
- m -
- m
: pappso::SavGolParams
- m_aaIonFactorBb
: pappso::XtandemHyperscoreBis
- m_aaIonFactorY
: pappso::XtandemHyperscoreBis
- m_aaLetter
: pappso::AaBase
- m_aaMassMap
: pappso::AaBase
- m_aaModificationList
: pappso::PeptideFixedModificationBuilder
, pappso::PeptideVariableModificationBuilder
- m_aaNumberOfCarbonMap
: pappso::AaBase
- m_aaNumberOfHydrogenMap
: pappso::AaBase
- m_aaNumberOfNitrogenMap
: pappso::AaBase
- m_aaNumberOfOxygenMap
: pappso::AaBase
- m_aaNumberOfSulfurMap
: pappso::AaBase
- m_aaVec
: pappso::Peptide
- m_abundanceRatio
: pappso::PeptideNaturalIsotopeAverage
- m_accession
: pappso::AaModification
, pappso::FilterOboPsiModTermAccession
, pappso::GrpProtein
, pappso::OboPsiModTerm
, pappso::Protein
- m_accumulationTime
: pappso::TimsFrameBase
- m_alignedRetentionTimeVector
: pappso::MsRunRetentionTime< T >
- m_allMs2Points
: pappso::MsRunRetentionTime< T >
- m_aminoAcidCharList
: pappso::AaBase
- m_arbitrary_minimum_mz
: pappso::FilterTandemDeisotope
- m_arbitrary_range_between_isotopes
: pappso::FilterTandemDeisotope
- m_area
: pappso::FilterPseudoCentroid
, pappso::TracePeak
- m_atomCount
: pappso::AaModification
- m_averageMz
: pappso::PeptideNaturalIsotopeAverage
- m_axisLabelX
: pappso::BasePlotWidget
- m_axisLabelY
: pappso::BasePlotWidget
- m_bins
: pappso::MassSpectrumCombiner
- m_bufferMaxSize
: pappso::MsRunXicExtractorDiskBuffer
- m_bufferSize
: pappso::MsRunXicExtractorDiskBuffer
- m_cacheSize
: pappso::TimsData
- m_centroidOptions
: pappso::TandemWrapperRun
, pappso::XtandemPresetSaxHandler
- m_charge
: pappso::MzPrecision
- m_chargeMinimalFractionalPart
: pappso::MassSpecTracePlotWidget
- m_chargeStateEnvelopePeakSpan
: pappso::MassSpecTracePlotWidget
- m_children
: pappso::MsRunDataSetTreeNode
- m_colorMapPlotConfig
: pappso::BaseColorMapPlotWidget
- m_context
: pappso::BasePlotWidget
, pappso::MassSpecTracePlotWidget
- m_convolveWithNr
: pappso::FilterSavitzkyGolay
- m_count
: pappso::GrpProtein
- m_countMsLevelSpectrum
: pappso::MsRunSimpleStatistics
- m_cumulativeCterMasses
: pappso::PeptideRawFragmentMasses
- m_cumulativeNterMasses
: pappso::PeptideRawFragmentMasses
- m_currentLabel
: pappso::XtandemInputSaxHandler
, pappso::XtandemOutputSaxHandler
, pappso::XtandemPresetSaxHandler
- m_currentProtein
: pappso::GrpGroupingMonitor
- m_currentText
: pappso::XtandemInputSaxHandler
, pappso::XtandemOutputSaxHandler
, pappso::XtandemPresetSaxHandler
- m_decimalPlaces
: pappso::MassDataCombinerInterface
- m_delta
: pappso::MzRange
- m_desc
: pappso::BasePlotWidget
- m_description
: pappso::GrpProtein
, pappso::Protein
- m_destinationMzXmlFileName
: pappso::XtandemInputSaxHandler
- m_destinationTandemInputFile
: pappso::XtandemInputSaxHandler
- m_destinationTandemInputFileName
: pappso::XtandemInputSaxHandler
- m_destinationTandemOutputFile
: pappso::XtandemOutputSaxHandler
- m_destinationTandemOutputFileName
: pappso::XtandemInputSaxHandler
- m_detectionThresholdOnMaxMin
: pappso::TraceDetectionZivy
- m_detectionThresholdOnMinMax
: pappso::TraceDetectionZivy
- m_diffC12C13_z1
: pappso::FilterRemoveC13
- m_diffC12C13_z2
: pappso::FilterRemoveC13
- m_diffFormula
: pappso::OboPsiModTerm
- m_diffMono
: pappso::OboPsiModTerm
- m_digitizerDelay
: pappso::TimsFrameBase
- m_digitizerTimebase
: pappso::TimsFrameBase
- m_direction
: pappso::PeptideFragment
- m_dt
: pappso::QualifiedMassSpectrum
- m_dtDoubleNodeVectorMap
: pappso::MsRunDataSetTree
- m_dynamic
: pappso::FilterRescaleY
- m_errorString
: pappso::XtandemInputSaxHandler
, pappso::XtandemOutputSaxHandler
, pappso::XtandemPresetSaxHandler
- m_factor
: pappso::FilterScaleFactorY
- m_fasta_file
: pappso::FastaFileIndexer
- m_fileFormat
: pappso::MsFileAccessor
, pappso::MsFileReader
- m_fileName
: pappso::BasePlotWidget
, pappso::MsFileAccessor
, pappso::MsFileReader
, pappso::MsRunId
, pappso::XyMsRunReader
- m_fileReaderType
: pappso::MsFileAccessor
- m_filter_floor
: pappso::XtandemSpectrumProcess
- m_filter_highpass
: pappso::XtandemSpectrumProcess
- m_filter_keep_greater
: pappso::XtandemSpectrumProcess
- m_filter_remove_c13
: pappso::XtandemSpectrumProcess
- m_filter_rescale
: pappso::XtandemSpectrumProcess
- m_filterGreatestY
: pappso::MassSpectrumFilterGreatestItensities
- m_filterMax
: pappso::FilterMorphoMaxMin
, pappso::FilterMorphoMinMax
- m_filterMin
: pappso::FilterMorphoMaxMin
, pappso::FilterMorphoMinMax
- m_filterMorphoMedian
: pappso::FilterMorphoBackground
- m_filterMorphoMinMax
: pappso::FilterMorphoBackground
- m_filterRange
: pappso::MassSpectrumFilterResampleKeepMzRange
, pappso::MassSpectrumFilterResampleRemoveMzRange
- m_filterXRange
: pappso::MassDataCombinerInterface
- m_findExactPsiModLabel
: pappso::OboPsiModTerm
- m_findRelatedPsiMsLabel
: pappso::OboPsiModTerm
- m_firstParse
: pappso::OboPsiModTerm
- m_fixedModificationList
: pappso::PeptideBuilder
- m_focusedBrush
: pappso::BasePlotWidget
- m_focusedColor
: pappso::BasePlotWidget
- m_groupNumber
: pappso::GrpGroup
, pappso::GrpPeptide
, pappso::GrpProtein
, pappso::GrpSubGroup
- m_grpGroupSpList
: pappso::GrpExperiment
- m_grpPeptideList
: pappso::GrpExperiment
- m_grpPeptidePtrList
: pappso::GrpProtein
- m_grpPostGroupingProteinListRemoval
: pappso::GrpExperiment
- m_grpPreGroupingProteinListRemoval
: pappso::GrpExperiment
- m_grpProteinList
: pappso::GrpExperiment
- m_grpProteinPtrList
: pappso::GrpSubGroup
- m_grpSubGroupPtrList
: pappso::GrpSubGroupSet
- m_halfWindowSize
: pappso::FilterLocalMaximum
, pappso::FilterMorphoAntiSpike
, pappso::FilterMorphoWindowBase
- m_handler
: pappso::FastaReader
, pappso::OboPsiMod
- m_hasScanNumbers
: pappso::PwizMsRunReader
- m_indexArray
: pappso::FastaFileIndexer
- m_indexNodeMap
: pappso::MsRunDataSetTree
- m_instance
: pappso::MsRunXicExtractorFactory
- m_integrationWidth
: pappso::FilterPseudoCentroid
- m_intensityThreshold
: pappso::FilterPseudoCentroid
- m_ionCount
: pappso::XtandemHyperscoreBis
- m_ionDeltaMz
: pappso::PeptideRawFragmentMasses
- m_ionIsotopeRatioScore
: pappso::IonIsotopeRatioScore
- m_ionList
: pappso::PeptideFragmentIonListBase
, pappso::XtandemHyperscoreBis
- m_ionType
: pappso::PeptideFragmentIon
- m_isApplyXRangeFilter
: pappso::MassDataCombinerInterface
- m_isEmptyMassSpectrum
: pappso::QualifiedMassSpectrum
- m_isExcludeParent
: pappso::XtandemSpectrumProcess
- m_isExcludeParent_lower_dalton
: pappso::XtandemSpectrumProcess
- m_isExcludeParent_neutral_loss
: pappso::XtandemSpectrumProcess
- m_isExcludeParent_upper_dalton
: pappso::XtandemSpectrumProcess
- m_isGroupingStarted
: pappso::GrpExperiment
- m_isotopeLevel
: pappso::PeptideNaturalIsotopeAverage
- m_isotopeRank
: pappso::PeptideNaturalIsotopeAverage
- m_isPotential
: pappso::PeptideMethioninRemove
- m_isProtCterMod
: pappso::PeptideFixedModificationBuilder
, pappso::PeptideVariableModificationBuilder
- m_isProtElseMod
: pappso::PeptideFixedModificationBuilder
, pappso::PeptideVariableModificationBuilder
- m_isProtNterMod
: pappso::PeptideFixedModificationBuilder
, pappso::PeptideVariableModificationBuilder
- m_isReadAhead
: pappso::MzxmlOutput
, pappso::SpectrumCollectionHandlerInterface
- m_isRefineSpectrumModel
: pappso::XtandemSpectrumProcess
- m_isRefineSpectrumSynthesis
: pappso::XtandemHyperscoreBis
- m_isRemoveIsotope
: pappso::XtandemSpectrumProcess
- m_isRemoveNonInformativeSubgroups
: pappso::GrpExperiment
- m_isTandemParameter
: pappso::XtandemInputSaxHandler
, pappso::XtandemOutputSaxHandler
, pappso::XtandemPresetSaxHandler
- m_labelMatch
: pappso::FilterOboPsiModTermLabel
- m_labelName
: pappso::XtandemInputSaxHandler
- m_lastAxisRangeHistoryIndex
: pappso::BasePlotWidget
- m_lD
: pappso::FilterSavitzkyGolay
- m_left
: pappso::TracePeak
- m_leftMousePseudoButtonKey
: pappso::BasePlotWidget
- m_length
: pappso::Protein
- m_listMod
: pappso::Aa
- m_m
: pappso::FilterSavitzkyGolay
- m_mapAccessionModifications
: pappso::AaModification
- m_mapDalton
: pappso::MassSpectrumCombinerFactory
, pappso::PrecisionFactory
- m_mapIsotope
: pappso::AaModification
, pappso::PeptideNaturalIsotope
- m_mapMz
: pappso::MassSpectrumCombinerFactory
, pappso::PrecisionFactory
- m_mapPeptides
: pappso::GrpExperiment
- m_mapPeptideToGroup
: pappso::GrpMapPeptideToGroup
- m_mapPeptideToSubGroupSet
: pappso::GrpGroup
, pappso::GrpMapPeptideToSubGroupSet
- m_mapPpm
: pappso::MassSpectrumCombinerFactory
, pappso::PrecisionFactory
- m_mapProteins
: pappso::GrpExperiment
- m_mapRes
: pappso::MassSpectrumCombinerFactory
, pappso::PrecisionFactory
- m_mapTandemInputParameters
: pappso::XtandemOutputSaxHandler
- m_mass
: pappso::AaModification
, pappso::GrpPeptide
, pappso::PeptideFragment
, pappso::PeptideFragmentIon
, pappso::PeptideNaturalIsotope
- m_massRange
: pappso::FilterOboPsiModTermDiffMono
- m_massSpectrumId
: pappso::QualifiedMassSpectrum
- m_max
: pappso::TracePeak
- m_maxMin
: pappso::TraceDetectionZivy
- m_maxMz
: pappso::MsRunXicExtractorDisk
- m_maxMzRange
: pappso::FilterTriangle
- m_maxNumberMod
: pappso::PeptideVariableModificationBuilder
- m_maxnumberofpeaks
: pappso::FilterPseudoCentroid
- m_maxPeptideVariantListSize
: pappso::Enzyme
- m_maxSize
: pappso::PeptideSizeFilter
- m_maxTandemRunTimeMs
: pappso::TandemWrapperRun
- m_maxX
: pappso::FilterResampleKeepXRange
, pappso::FilterResampleRemoveXRange
- m_message
: pappso::PappsoException
- m_minMax
: pappso::TraceDetectionZivy
- m_minMz
: pappso::MsRunXicExtractorDisk
- m_minNumberMod
: pappso::PeptideVariableModificationBuilder
- m_minSize
: pappso::PeptideSizeFilter
- m_minX
: pappso::FilterResampleKeepXRange
, pappso::FilterResampleRemoveXRange
- m_miscleavage
: pappso::Enzyme
- m_mmap_scan2index
: pappso::MsRunReaderScanNumberMultiMap
- m_modificationCount
: pappso::PeptideVariableModificationBuilder
- m_mouseMoveHandlerSkipAmount
: pappso::BasePlotWidget
- m_mouseMoveHandlerSkipCount
: pappso::BasePlotWidget
- m_ms1IsMasked
: pappso::MzxmlOutput
- m_ms1MeanFilter
: pappso::MsRunRetentionTime< T >
- m_ms1RetentionTimeVector
: pappso::MsRunRetentionTime< T >
- m_ms2MeanFilter
: pappso::MsRunRetentionTime< T >
- m_ms2MedianFilter
: pappso::MsRunRetentionTime< T >
- m_msDataPtrVector
: pappso::PwizMsFileReader
- m_msLevel
: pappso::QualifiedMassSpectrum
- m_msMsType
: pappso::TimsFrameBase
- m_msrun_points
: pappso::MsRunXicExtractor
, pappso::MsRunXicExtractorInterface::MsRunXicExtractorReadPoints
- m_msRunId
: pappso::QualifiedXic
- m_msRunSliceListCache
: pappso::MsRunXicExtractorDisk
- m_mutex
: pappso::AaModification
, pappso::MsRunXicExtractorDisk
, pappso::TimsData
- m_mz
: pappso::MzRange
, pappso::QualifiedXic
- m_mzCalibrationArr
: pappso::TimsFrameBase
- m_mzFormat
: pappso::MsRunId
- m_n_most_intense
: pappso::XtandemSpectrumProcess
- m_name
: pappso::AaModification
, pappso::BasePlotWidget
, pappso::OboPsiModTerm
- m_nameMatch
: pappso::FilterOboPsiModTermName
- m_nativeId
: pappso::MassSpectrumId
- m_needPeakListByMsLevel
: pappso::SpectrumCollectionHandlerInterface
- m_neutralLossMass
: pappso::XtandemSpectrumProcess
- m_neutralLossWindowDalton
: pappso::XtandemSpectrumProcess
- m_neutralPhosphoLossNumber
: pappso::PeptideFragmentIon
- m_nL
: pappso::FilterSavitzkyGolay
- m_nominal
: pappso::PrecisionBase
- m_nR
: pappso::FilterSavitzkyGolay
- m_nterCterCleavage
: pappso::PeptideFragment
- m_numberOfPoints
: pappso::FilterGreatestY
, pappso::FilterGreatestYperWindow
- m_oboPsiModTermList
: pappso::FilterOboPsiModSink
- m_ofastastream
: pappso::FastaOutputStream
- m_oldIndex
: pappso::PrecisionWidget
- m_origin
: pappso::AaModification
, pappso::OboPsiModTerm
- m_originalMsDataFileName
: pappso::XtandemOutputSaxHandler
- m_originMzDataFileName
: pappso::XtandemInputSaxHandler
- m_originTandemOutpuFileName
: pappso::XtandemInputSaxHandler
- m_originTandemPresetFileName
: pappso::XtandemInputSaxHandler
- m_paramsMap
: pappso::QualifiedMassSpectrum
- m_passY
: pappso::FilterHighPass
, pappso::FilterLowPass
- m_pattern
: pappso::PeptideModificatorBase
- m_pen
: pappso::BasePlotWidget
- m_pepModificatorPtrList
: pappso::PeptideModificatorPipeline
- m_peptide
: pappso::PeptideNaturalIsotope
- m_peptideModPtrList
: pappso::PeptideModificatorTee
- m_peptideNaturalIsotopeSpList
: pappso::PeptideNaturalIsotopeAverage
- m_peptidePtrList
: pappso::GrpPeptideSet
, pappso::GrpSubGroup
- m_peptideSet
: pappso::GrpGroup
- m_phosphorylationNumber
: pappso::PeptideFragmentIonListBase
- m_precisionPtr
: pappso::FilterComplementIonEnhancer
, pappso::FilterRemoveC13
- m_precursorCharge
: pappso::QualifiedMassSpectrum
- m_precursorIntensity
: pappso::QualifiedMassSpectrum
- m_precursorMz
: pappso::QualifiedMassSpectrum
- m_precursorNativeId
: pappso::QualifiedMassSpectrum
- m_precursorSpectrumIndex
: pappso::QualifiedMassSpectrum
- m_preferedFileReaderTypeMap
: pappso::MsFileAccessor
- m_protoHyperscore
: pappso::XtandemHyperscoreBis
- m_proxyMass
: pappso::Peptide
- m_psiModLabel
: pappso::OboPsiModTerm
- m_psiMsLabel
: pappso::OboPsiModTerm
- m_rank
: pappso::GrpPeptide
, pappso::GrpProtein
- m_ratio
: pappso::PeptideNaturalIsotope
- m_ratioPassY
: pappso::FilterHighPassPercentage
- m_recognitionSite
: pappso::Enzyme
- m_remainingGrpProteinList
: pappso::GrpExperiment
- m_removeTranslationStopRegExp
: pappso::Protein
- m_resolution
: pappso::FilterPseudoCentroid
- m_retentionTimeList
: pappso::MsRunXicExtractorDisk
- m_retentionTimeReferenceMethod
: pappso::MsRunRetentionTime< T >
- m_right
: pappso::TracePeak
- m_rightMousePseudoButtonKey
: pappso::BasePlotWidget
- m_rootNodes
: pappso::MsRunDataSetTree
- m_rt
: pappso::QualifiedMassSpectrum
- m_rtDoubleNodeVectorMap
: pappso::MsRunDataSetTree
- m_rtPoints
: RetentionTimeReader
- m_rtSize
: pappso::MsRunXicExtractorDisk
- m_runId
: pappso::MsRunId
- m_sampleName
: pappso::MsRunId
- m_scanNumber
: pappso::TimsFrameBase
- m_seamarks
: pappso::MsRunRetentionTime< T >
- m_sequence
: pappso::GrpPeptide
, pappso::Protein
- m_shouldTracersBeVisible
: pappso::BasePlotWidget
- m_sink
: pappso::FilterOboPsiModTermAccession
, pappso::FilterOboPsiModTermDiffMono
, pappso::FilterOboPsiModTermLabel
, pappso::FilterOboPsiModTermName
, pappso::PeptideBuilder
, pappso::PeptideFixedModificationBuilder
, pappso::PeptideMethioninRemove
, pappso::PeptideModificatorPipeline
, pappso::PeptideSemiEnzyme
, pappso::PeptideSizeFilter
, pappso::PeptideVariableModificationBuilder
- m_size
: pappso::PeptideFragment
- m_sliceBufferMap
: pappso::MsRunXicExtractorDiskBuffer
- m_sliceNumber
: pappso::MsRunSlice
- m_smooth
: pappso::TraceDetectionZivy
- m_smoothwidth
: pappso::FilterPseudoCentroid
- m_spectrumCount
: pappso::MsRunDataSetTree
- m_spectrumIndex
: pappso::MassSpectrumId
- m_spectrumList
: pappso::MsRunSlice
- m_subGroupList
: pappso::GrpGroup
- m_subGroupNumber
: pappso::GrpProtein
, pappso::GrpSubGroup
- m_tagStack
: pappso::XtandemInputSaxHandler
, pappso::XtandemOutputSaxHandler
, pappso::XtandemPresetSaxHandler
- m_takeOnlyFirstWildcard
: pappso::Enzyme
- m_tandemBinary
: pappso::TandemWrapperRun
- m_tandemVersion
: pappso::TandemWrapperRun
- m_targetMzSum
: pappso::FilterComplementIonEnhancer
- m_temporaryDirectory
: pappso::MsRunXicExtractorDisk
- m_term
: pappso::OboPsiMod
- m_threads
: pappso::XtandemPresetSaxHandler
- m_ticStart
: pappso::TraceDetectionMoulon
- m_ticStop
: pappso::TraceDetectionMoulon
- m_time
: pappso::TimsFrameBase
- m_timsBinFile
: pappso::TimsBinDec
- m_timsC6
: pappso::TimsFrameBase
- m_timsC7
: pappso::TimsFrameBase
- m_timsDataDirectory
: pappso::TimsData
- m_timsDataFrame
: pappso::TimsFrame
- m_timsDvStart
: pappso::TimsFrameBase
- m_timsFrameBaseCache
: pappso::TimsData
- m_timsFrameCache
: pappso::TimsData
- m_timsId
: pappso::TimsFrameBase
- m_timsNdelay
: pappso::TimsFrameBase
- m_timsSlope
: pappso::TimsFrameBase
- m_timsTtrans
: pappso::TimsFrameBase
- m_timsVmax
: pappso::TimsFrameBase
- m_timsVmin
: pappso::TimsFrameBase
- m_tmpDir
: pappso::TandemWrapperRun
- m_tmpDirName
: pappso::MsRunXicExtractorFactory
- m_totalMatchedIons
: pappso::XtandemHyperscoreBis
- m_totalNumberOfPrecursors
: pappso::TimsData
- m_totalNumberOfScans
: pappso::TimsData
- m_totalNumberPeptide
: pappso::GrpGroupingMonitor
- m_totalNumberProtein
: pappso::GrpGroupingMonitor
- m_triangleSlope
: pappso::FilterTriangle
- m_unfocusedBrush
: pappso::BasePlotWidget
- m_unfocusedColor
: pappso::BasePlotWidget
- m_value
: pappso::FilterResampleKeepGreater
, pappso::FilterResampleKeepSmaller
- m_valuesCorrected
: pappso::MsRunRetentionTime< T >
- m_wildCardB
: pappso::Enzyme
- m_wildCardX
: pappso::Enzyme
- m_wildCardZ
: pappso::Enzyme
- m_x
: pappso::FilterSavitzkyGolay
- m_xAxisRangeHistory
: pappso::BasePlotWidget
- m_xicExtractMethod
: pappso::MsRunXicExtractorInterface
, pappso::TimsXicExtractorInterface
- m_xicFilterSmoothing
: pappso::TraceDetectionMoulon
- m_xmlId
: pappso::MsRunId
- m_xmlPrefix
: pappso::MsFileAccessor
- m_xtProcess
: pappso::TandemWrapperRun
- m_xWindowRange
: pappso::FilterGreatestYperWindow
- m_yAxisRangeHistory
: pappso::BasePlotWidget
- m_yf
: pappso::FilterSavitzkyGolay
- m_yr
: pappso::FilterSavitzkyGolay
- m_z
: pappso::PeptideNaturalIsotopeAverage
, pappso::XicPeptideInterface
- makeDataPointCstSPtr()
: pappso::DataPoint
- makeFastaFileIndexerSPtr()
: pappso::FastaFileIndexer
- makeGrpGroupSp()
: pappso::GrpGroup
- makeGrpSubGroupSp()
: pappso::GrpSubGroup
- makeMapTraceCstSPtr()
: pappso::MapTrace
- makeMapTraceSPtr()
: pappso::MapTrace
- makeMassSpectrumCstSPtr()
: pappso::MassSpectrum
- makeMassSpectrumSPtr()
: pappso::MassSpectrum
- makeMsRunSliceSp()
: pappso::MsRunSlice
- makeNoConstPeptideSp()
: pappso::Peptide
- makePeptideFragmentIonListBaseSp()
: pappso::PeptideFragmentIonListBase
- makePeptideFragmentIonSp()
: pappso::PeptideFragmentIon
- makePeptideNaturalIsotopeAverageSp()
: pappso::PeptideNaturalIsotopeAverage
- makePeptideNaturalIsotopeListSp()
: pappso::PeptideNaturalIsotopeList
- makePeptideSp()
: pappso::Peptide
- makeProteinSp()
: pappso::Protein
- makeQualifiedMassSpectrumCstSPtr()
: pappso::QualifiedMassSpectrum
- makeQualifiedMassSpectrumSPtr()
: pappso::QualifiedMassSpectrum
- makeTraceCstSPtr()
: pappso::Trace
- makeTracePeakCstSPtr()
: pappso::TracePeak
- makeTraceSPtr()
: pappso::Trace
- makeXicCstSPtr()
: pappso::Xic
- makeXicSPtr()
: pappso::Xic
- MapAccessionModifications
: pappso::AaModification
- MapDaltonPrecision
: pappso::MassSpectrumCombinerFactory
, pappso::PrecisionFactory
- MapMzPrecision
: pappso::MassSpectrumCombinerFactory
, pappso::PrecisionFactory
- MapPpmPrecision
: pappso::MassSpectrumCombinerFactory
, pappso::PrecisionFactory
- MapResPrecision
: pappso::MassSpectrumCombinerFactory
, pappso::PrecisionFactory
- MapTrace()
: pappso::MapTrace
- maskMs1()
: pappso::MzxmlOutput
- MassDataCombinerInterface()
: pappso::MassDataCombinerInterface
- massDeconvolutionSignal()
: pappso::MassSpecTracePlotWidget
- MassSpecTracePlotWidget()
: pappso::MassSpecTracePlotWidget
- MassSpectrum()
: pappso::MassSpectrum
- MassSpectrumCombiner()
: pappso::MassSpectrumCombiner
- MassSpectrumCombinerInterface
: pappso::Trace
- massSpectrumCstSPtr()
: pappso::MsRunReader
, pappso::PwizMsRunReader
, pappso::TimsMsRunReader
, pappso::TimsMsRunReaderMs2
, pappso::XyMsRunReader
- massSpectrumFilter()
: pappso::MassSpectrum
- MassSpectrumFilterGreatestItensities()
: pappso::MassSpectrumFilterGreatestItensities
- MassSpectrumFilterResampleKeepMzRange()
: pappso::MassSpectrumFilterResampleKeepMzRange
- MassSpectrumFilterResampleRemoveMzRange()
: pappso::MassSpectrumFilterResampleRemoveMzRange
- MassSpectrumId()
: pappso::MassSpectrumId
- massSpectrumIndex()
: pappso::MsRunDataSetTree
- MassSpectrumMinusCombiner()
: pappso::MassSpectrumMinusCombiner
, pappso::TraceMinusCombiner
- MassSpectrumPlusCombiner()
: pappso::MassSpectrumPlusCombiner
, pappso::TracePlusCombiner
- massSpectrumSPtr()
: pappso::MsRunReader
, pappso::PwizMsRunReader
, pappso::TimsMsRunReader
, pappso::TimsMsRunReaderMs2
, pappso::XyMsRunReader
- MassSpectrumWidget()
: pappso::MassSpectrumWidget
, pappso::QCPSpectrum
- matchPeak()
: pappso::PeptideInterface
, pappso::PeptideNaturalIsotopeAverage
- maxCount()
: pappso::GrpSubGroup
- maxIntensityDataPoint()
: pappso::MassSpectrum
- maxKeyValue
: pappso::ColorMapPlotConfig
- maxMzValue
: pappso::ColorMapPlotConfig
- maxnumbersofpeaks_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- maxY()
: pappso::Trace
- maxYDataPoint()
: pappso::Trace
- mcsp_massSpectrum
: pappso::MsRunDataSetTreeNode
- mcsp_ms1Filter
: pappso::TimsData
- mcsp_ms2Filter
: pappso::TimsData
- mcsp_msRunId
: pappso::MassSpectrumId
, pappso::MsRunDataSetTree
, pappso::MsRunReader
- mcsp_msrunId
: pappso::MsRunRetentionTime< T >
- mcsp_peptideSp
: pappso::PeptideNaturalIsotopeAverage
- merge()
: pappso::GrpSubGroup
- mextend()
: ralab::base::ms::LocalMinPeakArea< TReal >
- MgfOutput()
: pappso::MgfOutput
- minKeyValue
: pappso::ColorMapPlotConfig
- minMzValue
: pappso::ColorMapPlotConfig
- minY()
: pappso::Trace
- minYDataPoint()
: pappso::Trace
- mobilityIndexBegin
: pappso::TimsFrame::XicComputeStructure
- mobilityIndexEnd
: pappso::TimsFrame::XicComputeStructure
- MorpheusScore()
: pappso::MorpheusScore
- mouseButtonsAtMousePress
: pappso::BasePlotContext
- mouseButtonsAtMouseRelease
: pappso::BasePlotContext
- mouseMoveEvent()
: pappso::QCPSpectrum
, pappso::QCPXic
- mouseMoveHandler()
: pappso::BasePlotWidget
, pappso::DriftSpecMassSpecColorMapPlotWidget
, pappso::DriftSpecTracePlotWidget
, pappso::MassSpecTracePlotWidget
, pappso::TicXicChromDriftSpecColorMapPlotWidget
, pappso::TicXicChromMassSpecColorMapPlotWidget
, pappso::TicXicChromTracePlotWidget
- mouseMoveHandlerDraggingCursor()
: pappso::BasePlotWidget
, pappso::DriftSpecMassSpecColorMapPlotWidget
, pappso::DriftSpecTracePlotWidget
, pappso::MassSpecTracePlotWidget
, pappso::TicXicChromDriftSpecColorMapPlotWidget
, pappso::TicXicChromMassSpecColorMapPlotWidget
, pappso::TicXicChromTracePlotWidget
- mouseMoveHandlerLeftButtonDraggingCursor()
: pappso::BasePlotWidget
- mouseMoveHandlerNotDraggingCursor()
: pappso::BasePlotWidget
, pappso::DriftSpecMassSpecColorMapPlotWidget
, pappso::DriftSpecTracePlotWidget
, pappso::MassSpecTracePlotWidget
, pappso::TicXicChromDriftSpecColorMapPlotWidget
, pappso::TicXicChromMassSpecColorMapPlotWidget
, pappso::TicXicChromTracePlotWidget
- mouseMoveHandlerRightButtonDraggingCursor()
: pappso::BasePlotWidget
- mousePressEvent()
: pappso::QCPSpectrum
, pappso::QCPXic
- mousePressHandler()
: pappso::BasePlotWidget
, pappso::DriftSpecMassSpecColorMapPlotWidget
, pappso::DriftSpecTracePlotWidget
, pappso::MassSpecTracePlotWidget
, pappso::TicXicChromDriftSpecColorMapPlotWidget
, pappso::TicXicChromMassSpecColorMapPlotWidget
, pappso::TicXicChromTracePlotWidget
- mousePseudoButtonKeyPressEvent()
: pappso::BasePlotWidget
- mousePseudoButtonKeyReleaseEvent()
: pappso::BasePlotWidget
- mouseReleaseEvent()
: pappso::QCPSpectrum
, pappso::QCPXic
- mouseReleaseEventSignal()
: pappso::BasePlotWidget
, pappso::MassSpecTracePlotWidget
- mouseReleaseHandler()
: pappso::BasePlotWidget
, pappso::DriftSpecMassSpecColorMapPlotWidget
, pappso::DriftSpecTracePlotWidget
, pappso::MassSpecTracePlotWidget
, pappso::TicXicChromDriftSpecColorMapPlotWidget
, pappso::TicXicChromMassSpecColorMapPlotWidget
, pappso::TicXicChromTracePlotWidget
- mouseReleaseHandlerLeftButton()
: pappso::BasePlotWidget
- mouseReleaseHandlerRightButton()
: pappso::BasePlotWidget
- moveMouseCursorGraphCoordToGlobal()
: pappso::BasePlotWidget
- moveMouseCursorPixelCoordToGlobal()
: pappso::BasePlotWidget
- mp_daltonValueSpinBox
: pappso::PrecisionWidget
- mp_errorStream
: pappso::TandemWrapperRun
- mp_firstModificator
: pappso::PeptideModificatorPipeline
- mp_hPosTracerItem
: pappso::BasePlotWidget
- mp_lastPeptideSinkInterface
: pappso::PeptideModificatorPipeline
- mp_mod
: pappso::PeptideFixedModificationBuilder
, pappso::PeptideVariableModificationBuilder
- mp_modAfter
: pappso::PeptideVariableModificationReplacement
- mp_monitor
: pappso::GrpExperiment
- mp_output
: pappso::MzxmlOutput::Translater
- mp_outputStream
: pappso::TandemWrapperRun
- mp_outStream
: pappso::GrpGroupingMonitor
- mp_parent
: pappso::MsRunDataSetTreeNode
- mp_peptideModificatorTee
: pappso::PeptideModificatorPipeline
- mp_ppmValueSpinBox
: pappso::PrecisionWidget
- mp_precision
: pappso::PeptideNaturalIsotopeAverage
, pappso::QualifiedXic
, pappso::XtandemHyperscoreBis
- mp_precisionDalton
: pappso::PrecisionWidget
- mp_precisionPpm
: pappso::PrecisionWidget
- mp_precisionRes
: pappso::PrecisionWidget
- mp_resValueSpinBox
: pappso::PrecisionWidget
- mp_selectLineItem
: pappso::BasePlotWidget
- mp_timsData
: pappso::TimsXicExtractorInterface
- mp_unitComboBox
: pappso::PrecisionWidget
- mp_vEndTracerItem
: pappso::BasePlotWidget
- mp_vPosTracerItem
: pappso::BasePlotWidget
- mp_vStartTracerItem
: pappso::BasePlotWidget
- mp_xDeltaTextItem
: pappso::BasePlotWidget
- mp_zoomRectItem
: pappso::BasePlotWidget
- mpa_multiMapScanNumber
: pappso::MsRunReader
- mpa_outputStream
: pappso::MgfOutput
, pappso::MzxmlOutput
- mpa_sequenceTxtIn
: pappso::FastaFileIndexer
- mpa_temporaryDirectory
: pappso::MsRunXicExtractorDisk
, pappso::TandemWrapperRun
- mpa_timsBinDec
: pappso::TimsData
- mpa_timsData
: pappso::TimsMsRunReader
, pappso::TimsMsRunReaderMs2
- MsFileAccessor()
: pappso::MsFileAccessor
, pappso::MsRunReader
, pappso::PwizMsRunReader
, pappso::TimsMsRunReader
, pappso::TimsMsRunReaderMs2
, pappso::XyMsRunReader
- MsFileReader()
: pappso::MsFileReader
- msp_fragment
: pappso::PeptideFragmentIon
- msp_massSpectrum
: pappso::QualifiedMassSpectrum
- msp_msData
: pappso::PwizMsRunReader
- msp_msrun_reader
: pappso::MsRunXicExtractorInterface
- msp_msrunReader
: pappso::MsRunRetentionTime< T >
- msp_naturalIsotopeAverage
: pappso::XicPeptideFragmentIonNaturalIsotope
- msp_peptide
: pappso::PeptideFragment
, pappso::PeptideFragmentIonListBase
, pappso::PeptideNaturalIsotopeList
- msp_peptide_fragment_ion_list
: pappso::PeptideFragmentIonListBase
- msp_peptide_natural_isotope_list
: pappso::PeptideNaturalIsotopeList
- msp_peptideFragmentIon
: pappso::XicPeptideFragmentIon
, pappso::XicPeptideFragmentIonNaturalIsotope
- msp_peptideInterface
: pappso::XicPeptideInterface
- msp_xic
: pappso::QualifiedXic
- MsRunDataSetTree()
: pappso::MsRunDataSetTree
, pappso::MsRunDataSetTreeNode
- MsRunDataSetTreeNode()
: pappso::MsRunDataSetTreeNode
- MsRunId()
: pappso::MsRunId
- MsRunReader()
: pappso::MsRunReader
- MsRunReaderScanNumberMultiMap()
: pappso::MsRunReaderScanNumberMultiMap
- msRunReaderSp()
: pappso::MsFileAccessor
- MsRunRetentionTime()
: pappso::MsRunRetentionTime< T >
- MsRunSlice()
: pappso::MsRunSlice
- MsRunXicExtractor()
: pappso::MsRunXicExtractor
- MsRunXicExtractorDisk()
: pappso::MsRunXicExtractorDisk
- MsRunXicExtractorDiskBuffer()
: pappso::MsRunXicExtractorDiskBuffer
- MsRunXicExtractorFactory
: pappso::MsRunXicExtractor
, pappso::MsRunXicExtractorDisk
, pappso::MsRunXicExtractorDiskBuffer
, pappso::MsRunXicExtractorFactory
- MsRunXicExtractorInterface()
: pappso::MsRunXicExtractorInterface
- MsRunXicExtractorReadPoints()
: pappso::MsRunXicExtractorInterface::MsRunXicExtractorReadPoints
- mzCellCount
: pappso::ColorMapPlotConfig
- mzChanged()
: pappso::MassSpectrumWidget
- mzChangeEvent()
: pappso::MassSpectrumWidget
- mzIndexLowerBound
: pappso::TimsFrame::XicComputeStructure
- mzIndexUpperBound
: pappso::TimsFrame::XicComputeStructure
- mzListDataFormatRegExp
: pappso::Utils
- MzPrecision()
: pappso::MzPrecision
- MzRange()
: pappso::MzRange
- mzRange
: pappso::TimsXicStructure
- MzxmlOutput()
: pappso::MzxmlOutput